Tutorials

Warning

These tutorials assume you are familiar with the Autoscoper’s User Interface.

A series of tutorials are available to help you get started using the SlicerAutoscoperM modules.

Users who are new to BVR tracking can follow the Loading and Tracking Data tutorial, which will walk you through the process of loading sample data and tracking a bone. If you have data and are ready to use Autoscoper for tracking, the Pre-Processing Module and Loading Custom Data tutorials walk users through the process of preparing your data for use with Autoscoper. Rendering and Filters, will walk you through the process of creating and applying filters to your data.

For users with 4DCT and sequential 3DCT data, see the Hierarchical 3D Registration (3DH) Module

Contents

• Loading and Tracking Data
  • Downloading Sample Data
  • Launching Autoscoper and Loading Sample Data
  • Tracking a Skeletal Structure
• Evaluating Tracking Results
  • Exporting your Tracking Results from Autoscoper
  • Switching to the Tracking Evaluation Module
  • Loading in Results
  • Visualizing Results
• Loading Custom Data
  • Preparing the Data
  • Recommended File Structure
  • Camera Calibration File
  • Creating a Configuration File
• Rendering and Filters
  • Types of Filters
  • Adding a new Filter
  • Removing a Filter
  • Adjusting Filter Parameters
  • Saving and Loading Filters
• Pre-Processing Module
  • Introduction
  • Accessing the Pre-Processing Module
  • General Inputs
  • Segmentations
  • Partial Volume Cropping and Extraction
  • Configuration File Generation
• Hierarchical 3D Registration (3DH) Module
  • Introduction
  • Accessing the Hierarchical 3D Registration Module
  • General Inputs and Outputs
• Saving and Resuming a Trial
  • Saving a Trial
  • Resuming a Trial
• Ticks and Tricks for Aligning Partial Volumes
  • Translation in two dimensions